Reproducible Bioinformatics with Python
Description
Loading Description...
More Details
Format
Language
Undetermined
ISBN
9781098100889, 1098100883
Notes
General Note
Title from content provider.
Description
Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and postdoc researchers who've never learned basic programming skills. This practical guide shows how to exploit the best parts of Python for solving problems in biology while also creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates how to write effective Python code and how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools--such as linters, formatters, type checkers, and tests--to write documented and tested programs. Create command-line Python programs that document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures (strings, lists, and sets) and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA, FASTQ, and SwissProt Find patterns of text using regular expressions Use higher-order functions in Python like filter() and map().
Local note
O'Reilly,O'Reilly Online Learning: Academic/Public Library Edition
Also in this Series
Checking series information...
Reviews from GoodReads
Loading GoodReads Reviews.
Citations
APA Citation, 7th Edition (style guide)
Youens-Clark, K. (2021). Reproducible Bioinformatics with Python . O'Reilly Media, Inc..
Chicago / Turabian - Author Date Citation, 17th Edition (style guide)Youens-Clark, Ken. 2021. Reproducible Bioinformatics With Python. O'Reilly Media, Inc.
Chicago / Turabian - Humanities (Notes and Bibliography) Citation, 17th Edition (style guide)Youens-Clark, Ken. Reproducible Bioinformatics With Python O'Reilly Media, Inc, 2021.
MLA Citation, 9th Edition (style guide)Youens-Clark, Ken. Reproducible Bioinformatics With Python O'Reilly Media, Inc., 2021.
Note! Citations contain only title, author, edition, publisher, and year published. Citations should be used as a guideline and should be double checked for accuracy. Citation formats are based on standards as of August 2021.
Staff View
Grouped Work ID
8b7c05e4-2d27-c081-3dbf-96e50b184933-und
Grouping Information
Grouped Work ID | 8b7c05e4-2d27-c081-3dbf-96e50b184933-und |
---|---|
Full title | reproducible bioinformatics with python |
Author | youens clark ken |
Grouping Category | book |
Last Update | 2024-10-08 10:55:34AM |
Last Indexed | 2024-10-25 03:24:53AM |
Book Cover Information
Image Source | contentCafe |
---|---|
First Loaded | Nov 12, 2023 |
Last Used | Oct 23, 2024 |
Marc Record
First Detected | Mar 21, 2023 11:04:55 AM |
---|---|
Last File Modification Time | Mar 21, 2023 11:04:55 AM |
Suppressed | Record had no items |
MARC Record
LEADER | 02155cam a2200277Mu 4500 | ||
---|---|---|---|
001 | on1235824801 | ||
003 | OCoLC | ||
005 | 20230321110415.0 | ||
006 | m d | ||
007 | cr n ||| | ||
008 | 210120s2021 xx o ||| 0 und d | ||
020 | |a 9781098100889 | ||
020 | |a 1098100883 | ||
035 | |a (OCoLC)1235824801 | ||
040 | |a VT2|b eng|c VT2|d TOH|d OCLCQ | ||
049 | |a MAIN | ||
100 | 1 | |a Youens-Clark, Ken. | |
245 | 1 | 0 | |a Reproducible Bioinformatics with Python|h [electronic resource] /|c Ken Youens-Clark. |
260 | |a [S.l.] :|b O'Reilly Media, Inc.,|c 2021. | ||
300 | |a 1 online resource | ||
500 | |a Title from content provider. | ||
520 | |a Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and postdoc researchers who've never learned basic programming skills. This practical guide shows how to exploit the best parts of Python for solving problems in biology while also creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates how to write effective Python code and how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools--such as linters, formatters, type checkers, and tests--to write documented and tested programs. Create command-line Python programs that document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures (strings, lists, and sets) and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA, FASTQ, and SwissProt Find patterns of text using regular expressions Use higher-order functions in Python like filter() and map(). | ||
590 | |a O'Reilly|b O'Reilly Online Learning: Academic/Public Library Edition | ||
856 | 4 | 0 | |u https://library.access.arlingtonva.us/login?url=https://learning.oreilly.com/library/view/~/9781098100872/?ar|x O'Reilly|z eBook |
994 | |a 92|b VIA | ||
999 | |c 284663|d 284663 |